Description
protein tyrosine phosphatase receptor type C [Source:NCBI gene (formerly Entrezgene);Acc:100522631]
Location
Chromosome 10: 21,466,373-21,764,560 forward strand.
Sscrofa11.1:CM000821.5
About this gene
This gene has 8 transcripts (splice variants), 165 orthologues and 36 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|
| PTPRC-202 | ENSSSCT00000037090.2 | 5098 | 804aa | ENSSSCP00000038572.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287A482 | - |
| PTPRC-207 | ENSSSCT00000034423.3 | 4219 | 948aa | ENSSSCP00000029209.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | K7GMW0 | <p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2, |
| PTPRC-204 | ENSSSCT00000048012.2 | 4163 | 1092aa | ENSSSCP00000040401.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A287A9D0 | <p>APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P5, |
| PTPRC-208 | ENSSSCT00000085971.1 | 4153 | 926aa | ENSSSCP00000067591.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A5G2R067 | <p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2, |
| PTPRC-205 | ENSSSCT00000011934.4 | 4085 | 1066aa | ENSSSCP00000011627.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F1S5F1 | <p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2, |
| PTPRC-206 | ENSSSCT00000087706.1 | 4049 | 1054aa | ENSSSCP00000066391.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A5G2R711 | <p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2, |
| PTPRC-203 | ENSSSCT00000011937.4 | 3780 | 751aa | ENSSSCP00000011630.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | F1S5D8 | - |
| PTPRC-201 | ENSSSCT00000066711.1 | 374 | 34aa | ENSSSCP00000072671.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | A0A4X1SP86 A0A5G2R602 | - |
