Description
HEPACAM family member 2 [Source:MGI Symbol;Acc:MGI:2141520]
Location
Chromosome 6: 3,476,076-3,487,429 reverse strand.
About this transcript
This transcript has 4 exons, is annotated with 11 domains and features, is associated with 625 variant alleles and maps to 42 oligo probes.
Gene
This transcript is a product of gene ENSMUSG00000044156.15 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| Hepacam2-201 | ENSMUST00000049985.15 | 2328 | 463aa | ENSMUSP00000058882.8 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS39414 | Q4VAH7 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, |
| Hepacam2-205 | ENSMUST00000201607.4 | 796 | 206aa | ENSMUSP00000143834.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A0J9YTS9 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| Hepacam2-202 | ENSMUST00000200854.2 | 690 | 153aa | ENSMUSP00000144362.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | V9GX19 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |
| Hepacam2-203 | ENSMUST00000200972.2 | 3786 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | <p>TSL NA: A transcript that was not analysed for TSL.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:NA, |
| Hepacam2-204 | ENSMUST00000201276.2 | 1945 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |