Description
farnesyl diphosphate synthetase [Source:MGI Symbol;Acc:MGI:104888]
Gene Synonyms
6030492I17Rik, Fdpsl1
Location
Chromosome 3: 89,000,895-89,009,195 reverse strand.
About this transcript
This transcript has 11 exons, is annotated with 10 domains and features, is associated with 452 variant alleles and maps to 246 oligo probes.
Gene
This transcript is a product of gene ENSMUSG00000059743.13 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| Fdps-203 | ENSMUST00000196709.5 | 1382 | 353aa | ENSMUSP00000142770.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS17488 | Q4FJN9 Q920E5 | <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, |
| Fdps-201 | ENSMUST00000081848.13 | 1237 | 353aa | ENSMUSP00000080531.9 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS17488 | Q4FJN9 Q920E5 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, |
| Fdps-204 | ENSMUST00000196921.5 | 893 | 225aa | ENSMUSP00000142704.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A0G2JEB3 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |
| Fdps-202 | ENSMUST00000196254.5 | 722 | 240aa | ENSMUSP00000142669.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A0G2JE82 | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete, <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |
| Fdps-206 | ENSMUST00000199668.3 | 482 | 121aa | ENSMUSP00000142393.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A0G2JDJ5 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| Fdps-205 | ENSMUST00000198239.2 | 2953 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | <p>TSL NA: A transcript that was not analysed for TSL.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:NA, |
| Fdps-207 | ENSMUST00000200433.2 | 555 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |