Description
Scm polycomb group protein like 2 [Source:MGI Symbol;Acc:MGI:1340042]
Gene Synonyms
4932420G07Rik
Location
Chromosome X: 159,945,746-160,039,948 forward strand.
About this transcript
This transcript has 24 exons, is annotated with 32 domains and features, is associated with 1882 variant alleles and maps to 223 oligo probes.
Gene
This transcript is a product of gene ENSMUSG00000000037.18 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| Scml2-201 | ENSMUST00000019101.11 | 4842 | 905aa | ENSMUSP00000019101.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS72460 | B1AVB5 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Scml2-202 | ENSMUST00000074802.12 | 3440 | 845aa | ENSMUSP00000074356.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS81193 | B1AVB4 | <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Scml2-206 | ENSMUST00000112345.8 | 4847 | 901aa | ENSMUSP00000107964.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | E9Q796 | <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Scml2-203 | ENSMUST00000077375.5 | 3550 | 969aa | ENSMUSP00000076593.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | B1AVB3 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P5, |
| Scml2-204 | ENSMUST00000087090.10 | 2953 | 827aa | ENSMUSP00000084325.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | B1AVB2 | <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2, |
| Scml2-205 | ENSMUST00000101113.9 | 2931 | 825aa | ENSMUSP00000098672.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | B1AVB1 | <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2, |
| Scml2-208 | ENSMUST00000238361.2 | 1894 | 130aa | ENSMUSP00000158809.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A571BGE2 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, |
| Scml2-209 | ENSMUST00000238603.2 | 1257 | 367aa | ENSMUSP00000158772.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A571BDL9 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, |
| Scml2-207 | ENSMUST00000124775.2 | 517 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |