Description
INO80 complex subunit C [Source:MGI Symbol;Acc:MGI:2443014]
Gene Synonyms
D030070L09Rik
Location
Chromosome 18: 24,239,431-24,254,892 reverse strand.
About this transcript
This transcript has 6 exons, is annotated with 4 domains and features, is associated with 803 variant alleles and maps to 156 oligo probes.
Gene
This transcript is a product of gene ENSMUSG00000047989.12 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| Ino80c-204 | ENSMUST00000153360.8 | 2498 | 191aa | ENSMUSP00000114643.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS29099 | Q8BHA0 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P2: Where the APPRIS core modules are unable to choose a clear principal variant (approximately 25% of human protein coding genes), the database chooses two or more of the CDS variants as "candidates" to be the principal variant.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P2, |
| Ino80c-203 | ENSMUST00000141489.2 | 2207 | 94aa | ENSMUSP00000122372.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | D3Z6F3 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Ino80c-201 | ENSMUST00000055012.12 | 909 | 231aa | ENSMUSP00000055342.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | F8WIA0 | <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Ino80c-202 | ENSMUST00000125169.2 | 756 | 134aa | ENSMUSP00000117684.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | D3Z3N1 | <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS ALT1: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that is conserved in at least three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT1, |