Description
spermine oxidase [Source:MGI Symbol;Acc:MGI:2445356]
Gene Synonyms
B130066H01Rik, SMO
Location
Chromosome 2: 131,333,684-131,367,103 forward strand.
About this transcript
This transcript has 7 exons, is annotated with 12 domains and features, is associated with 1120 variant alleles and maps to 222 oligo probes.
Gene
This transcript is a product of gene ENSMUSG00000027333.19 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| Smox-204 | ENSMUST00000110181.8 | 2299 | 385aa | ENSMUSP00000105810.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS50722 | Q3TLR8 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Smox-201 | ENSMUST00000028806.12 | 2270 | 555aa | ENSMUSP00000028806.6 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS16763 | Q99K82-1 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, |
| Smox-207 | ENSMUST00000110186.9 | 2170 | 585aa | ENSMUSP00000105815.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS50719 | Q99K82-2 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Smox-208 | ENSMUST00000110188.8 | 1991 | 536aa | ENSMUSP00000105817.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS50720 | Q99K82-6 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Smox-209 | ENSMUST00000110189.9 | 1919 | 512aa | ENSMUSP00000105818.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS50721 | Q99K82-7 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Smox-203 | ENSMUST00000110180.2 | 1617 | 419aa | ENSMUSP00000105809.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS50718 | Q99K82-8 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Smox-202 | ENSMUST00000110179.9 | 1320 | 243aa | ENSMUSP00000105808.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS50723 | A2ANQ4 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Smox-206 | ENSMUST00000110183.9 | 1159 | 248aa | ENSMUSP00000105812.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS50724 | Q99K82-5 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Smox-205 | ENSMUST00000110182.9 | 985 | 190aa | ENSMUSP00000105811.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS50725 | Q99K82-10 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Smox-210 | ENSMUST00000129143.8 | 768 | 194aa | ENSMUSP00000120237.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A2ANQ3 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |
| Smox-211 | ENSMUST00000131698.2 | 414 | 56aa | ENSMUSP00000114956.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A2AP08 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |
| Smox-217 | ENSMUST00000183947.8 | 1437 | 209aa | ENSMUSP00000139278.2 | Nonsense mediated decay | - | Q99K82-4 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, |
| Smox-215 | ENSMUST00000183575.8 | 782 | 80aa | ENSMUSP00000139099.2 | Nonsense mediated decay | - | V9GXD6 | <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |
| Smox-216 | ENSMUST00000183881.2 | 471 | 68aa | ENSMUSP00000139111.2 | Nonsense mediated decay | - | V9GXE5 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |
| Smox-212 | ENSMUST00000149180.2 | 326 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |
| Smox-214 | ENSMUST00000151627.8 | 2223 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, |
| Smox-213 | ENSMUST00000151143.2 | 720 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |