Description
sorting nexin 15 [Source:MGI Symbol;Acc:MGI:1916274]
Gene Synonyms
1500032B08Rik, E130013C21Rik
Location
Chromosome 19: 6,169,429-6,178,334 reverse strand.
About this transcript
This transcript has 8 exons, is annotated with 17 domains and features, is associated with 578 variant alleles and maps to 158 oligo probes.
Gene
This transcript is a product of gene ENSMUSG00000024787.15 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| Snx15-201 | ENSMUST00000025702.14 | 1635 | 337aa | ENSMUSP00000025702.8 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS29495 | Q91WE1 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, |
| Snx15-207 | ENSMUST00000154601.8 | 767 | 251aa | ENSMUSP00000122740.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | D3Z479 | <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Snx15-205 | ENSMUST00000138931.3 | 733 | 230aa | ENSMUSP00000114189.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | D3YVT2 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |
| Snx15-208 | ENSMUST00000235824.2 | 725 | 193aa | ENSMUSP00000158383.2 | Nonsense mediated decay | - | A0A494BB63 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, |
| Snx15-203 | ENSMUST00000124964.8 | 772 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| Snx15-204 | ENSMUST00000129076.2 | 586 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |
| Snx15-206 | ENSMUST00000150718.2 | 427 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |
| Snx15-202 | ENSMUST00000124171.8 | 376 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |