Description
chromobox 1 [Source:MGI Symbol;Acc:MGI:105369]
Gene Synonyms
Cbx-rs2, E430007M08Rik, HP1B, Hp1beta, M31, MOD1
Location
Chromosome 11: 96,679,953-96,694,795 forward strand.
About this transcript
This transcript has 4 exons, is annotated with 21 domains and features, is associated with 661 variant alleles and maps to 119 oligo probes.
Gene
This transcript is a product of gene ENSMUSG00000018666.14 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| Cbx1-203 | ENSMUST00000093943.10 | 1251 | 185aa | ENSMUSP00000091475.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS25303 | P83917 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, |
| Cbx1-201 | ENSMUST00000018810.10 | 1824 | 138aa | ENSMUSP00000018810.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | Q7TPM0 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Cbx1-202 | ENSMUST00000079702.4 | 912 | 150aa | ENSMUSP00000078640.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | Q9CYJ8 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| Cbx1-204 | ENSMUST00000134585.8 | 2377 | 138aa | ENSMUSP00000137834.2 | Nonsense mediated decay | - | Q7TPM0 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, |
| Cbx1-205 | ENSMUST00000141257.2 | 814 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |