Description
ribosomal RNA processing 7 homolog A [Source:MGI Symbol;Acc:MGI:1922028]
Gene Synonyms
1110014J01Rik
Location
Chromosome 15: 82,997,634-83,007,002 reverse strand.
About this transcript
This transcript has 7 exons, is annotated with 13 domains and features, is associated with 635 variant alleles and maps to 201 oligo probes.
Gene
This transcript is a product of gene ENSMUSG00000018040.10 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | Flags |
|---|---|---|---|---|---|---|---|---|
| Rrp7a-201 | ENSMUST00000018184.10 | 4363 | 280aa | ENSMUSP00000018184.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS27696 | Q9D1C9 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, |
| Rrp7a-202 | ENSMUST00000166019.2 | 492 | 145aa | ENSMUSP00000129142.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | E9PYF0 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |
| Rrp7a-204 | ENSMUST00000167483.2 | 759 | 163aa | ENSMUSP00000128380.2 | Nonsense mediated decay | - | E9QAX0 | <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |
| Rrp7a-203 | ENSMUST00000166766.2 | 486 | 51aa | ENSMUSP00000127001.2 | Nonsense mediated decay | - | F6VVA3 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| Rrp7a-205 | ENSMUST00000167589.2 | 792 | No protein | - | An alternatively spliced transcript believed to contain intronic sequence relative to other, coding, transcripts of the same gene.Retained intron | - | - | <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |