Description
pancreas associated transcription factor 1a [Source:HGNC Symbol;Acc:HGNC:23734]
Gene Synonyms
PTF1-p48, bHLHa29, p48
Location
Chromosome 10: 23,193,271-23,194,163 forward strand.
About this transcript
This transcript has 2 exons, is annotated with 4 domains and features, is associated with 383 variant alleles and maps to 126 oligo probes.
Gene
This transcript is a product of gene ENSG00000168267.7 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq Match | Flags |
|---|---|---|---|---|---|---|---|---|---|
| PTF1A-201 | ENST00000376504.4 | 1545 | 328aa | ENSP00000365687.3 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS7143 | Q7RTS3 | NM_178161.3 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select v0.92, |
| PTF1A-204 | ENST00000639873.1 | 552 | 38aa | ENSP00000491542.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A1W2PPH2 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| PTF1A-205 | ENST00000640579.1 | 484 | 31aa | ENSP00000492055.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A1W2PR29 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| PTF1A-206 | ENST00000640697.1 | 475 | 28aa | ENSP00000491704.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A1W2PQF5 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| PTF1A-203 | ENST00000639082.1 | 456 | 66aa | ENSP00000492481.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A1W2PRT5 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| PTF1A-202 | ENST00000638469.1 | 408 | 52aa | ENSP00000491649.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A1W2PQC4 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |