Description
XRCC1 N-terminal domain containing 1-like [Source:NCBI gene (formerly Entrezgene);Acc:100133315]
Location
Chromosome 11: 71,884,313-71,928,595 reverse strand.
About this transcript
This transcript has 5 exons, is annotated with 6 domains and features, is associated with 15473 variant alleles and maps to 184 oligo probes.
Gene
This transcript is a product of gene ENSG00000254469.8 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq Match | Flags |
|---|---|---|---|---|---|---|---|---|---|
| AP002495.1-203 | ENST00000679412.1 | 4969 | 234aa | ENSP00000506430.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | - | The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P5: Where the APPRIS core modules are unable to choose a clear principal variant and none of the candidate variants are annotated by CCDS, APPRIS selects the longest of the candidate isoforms as the principal variant.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P5, |
| AP002495.1-206 | ENST00000529844.5 | 1781 | 142aa | ENSP00000433080.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | Q6ZNB5 | - | <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| AP002495.1-201 | ENST00000679695.1 | 1167 | 229aa | ENSP00000506504.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | - | - | The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS ALT2: For genes in which the APPRIS core modules are unable to choose a clear principal isoform, the ALT1 is the candidate transcript(s) models that appear to be conserved in fewer than three tested species.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS ALT2, |
| AP002495.1-204 | ENST00000528511.6 | 933 | 207aa | ENSP00000434508.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | E9PQ18 | - | <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| AP002495.1-202 | ENST00000532852.5 | 754 | 141aa | ENSP00000436725.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | H0YEW9 | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete, <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |
| AP002495.1-207 | ENST00000529513.5 | 655 | 134aa | ENSP00000435060.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | E9PLZ0 | - | <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| AP002495.1-210 | ENST00000528184.1 | 588 | 49aa | ENSP00000435720.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | E9PIP4 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 4: A transcript where the best supporting EST is flagged as suspect</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:4, |
| AP002495.1-209 | ENST00000534704.5 | 580 | 82aa | ENSP00000436412.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | E9PP57 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |
| AP002495.1-208 | ENST00000533047.5 | 564 | 88aa | ENSP00000435620.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | E9PJ82 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, |
| AP002495.1-205 | ENST00000528560.2 | 659 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| AP002495.1-211 | ENST00000531488.1 | 541 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |