Description
pogo transposable element derived with KRAB domain [Source:HGNC Symbol;Acc:HGNC:18800]
Gene Synonyms
BASS2, KIAA15131, KRBOX2, LST003
Location
Chromosome 1: 166,839,447-166,849,208 forward strand.
About this transcript
This transcript has 5 exons, is annotated with 10 domains and features, is associated with 2618 variant alleles and maps to 294 oligo probes.
Gene
This transcript is a product of gene ENSG00000143157.12 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq Match | Flags |
|---|---|---|---|---|---|---|---|---|---|
| POGK-201 | ENST00000367875.1 | 6254 | 609aa | ENSP00000356849.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS1254 | A0A024R8Y1 Q9P215 | - | <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, |
| POGK-202 | ENST00000367876.9 | 5751 | 609aa | ENSP00000356850.4 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS1254 | A0A024R8Y1 Q9P215 | NM_017542.5 | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select v0.92, |
| POGK-203 | ENST00000449930.5 | 954 | 209aa | ENSP00000404402.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | Q5TIJ2 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |