Description
small nuclear ribonucleoprotein 13 [Source:HGNC Symbol;Acc:HGNC:7819]
Gene Synonyms
15.5K, FA-1, NHP2L1, SNRNP15-5, SPAG12, SSFA1
Location
Chromosome 22: 41,674,925-41,690,504 reverse strand.
About this transcript
This transcript has 3 exons, is annotated with 16 domains and features, is associated with 4729 variant alleles and maps to 134 oligo probes.
Gene
This transcript is a product of gene ENSG00000100138.15 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq Match | Flags |
|---|---|---|---|---|---|---|---|---|---|
| SNU13-202 | ENST00000401959.6 | 1458 | 128aa | ENSP00000383949.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS33653 | P55769 Q6FHM6 | NM_001003796.2 | <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select v0.92, |
| SNU13-210 | ENST00000648674.1 | 1036 | 128aa | ENSP00000497142.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS14022 | P55769 Q6FHM6 | - | The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, |
| SNU13-201 | ENST00000215956.10 | 877 | 128aa | ENSP00000215956.5 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS14022 | P55769 Q6FHM6 | - | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, |
| SNU13-209 | ENST00000648350.1 | 948 | 272aa | ENSP00000498157.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A3B3IUA2 | - | The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| SNU13-205 | ENST00000469028.2 | 898 | 41aa | ENSP00000497330.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A3B3ISH1 | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |
| SNU13-204 | ENST00000463675.6 | 788 | 73aa | ENSP00000497047.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A3B3IRU2 | - | <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| SNU13-211 | ENST00000649479.1 | 708 | 73aa | ENSP00000497535.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A3B3IRU2 | - | The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| SNU13-206 | ENST00000469522.1 | 640 | 21aa | ENSP00000497320.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | A0A3B3ISH9 | - | <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| SNU13-203 | ENST00000402458.1 | 462 | 132aa | ENSP00000383989.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | B1AHD1 | - | <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| SNU13-212 | ENST00000649722.1 | 542 | 67aa | ENSP00000497306.1 | Nonsense mediated decay | - | A0A3B3ISK4 | - | - |
| SNU13-208 | ENST00000648161.1 | 1340 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | - |
| SNU13-207 | ENST00000488571.2 | 600 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | <p>TSL 5: A transcript where no single transcript supports the model structure.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:5, |