Description
tRNA methyltransferase 13 homolog [Source:HGNC Symbol;Acc:HGNC:25502]
Gene Synonyms
CCDC76, FLJ10287, FLJ11219
Location
Chromosome 1: 100,133,150-100,140,540 forward strand.
About this transcript
This transcript has 5 exons, is annotated with 6 domains and features, is associated with 2048 variant alleles and maps to 157 oligo probes.
Gene
This transcript is a product of gene ENSG00000122435.10 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt Match | RefSeq Match | Flags |
|---|---|---|---|---|---|---|---|---|---|
| TRMT13-202 | ENST00000370141.7 | 3130 | 481aa | ENSP00000359160.2 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | CCDS765 | Q9NUP7-1 | - | <p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, |
| TRMT13-201 | ENST00000370139.1 | 711 | 130aa | ENSP00000359158.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | Q5VVK9 | - | <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| TRMT13-203 | ENST00000370143.5 | 476 | 109aa | ENSP00000359162.1 | Gene/transcipt that contains an open reading frame (ORF).Protein coding | - | Q5VVL2 | - | <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, |
| TRMT13-204 | ENST00000482437.5 | 1582 | 175aa | ENSP00000432616.1 | Nonsense mediated decay | - | Q9NUP7-2 | - | <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |
| TRMT13-205 | ENST00000493651.1 | 586 | No protein | - | Gene/transcript that doesn't contain an open reading frame (ORF).Processed transcript | - | - | - | <p>TSL 2: A transcript where the best supporting mRNA is flagged as suspect or the support is from multiple ESTs</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:2, |