Transcript: UBQLN3-201 ENST00000311659.5

Description

ubiquilin 3 [Source:HGNC Symbol;Acc:HGNC:12510]

Gene Synonyms

TUP-1

Location

Chromosome 11: 5,507,300-5,509,957 reverse strand.

About this transcript

This transcript has 2 exons, is annotated with 26 domains and features, is associated with 1548 variant alleles and maps to 256 oligo probes.

Gene

This transcript is a product of gene ENSG00000175520.9 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
UBQLN3-201	ENST00000311659.5	2379	655aa	ENSP00000347997.2	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS7758	A0A140VJZ3 Q9H347	NM_017481.4	<p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select v0.92,
UBQLN3-202	ENST00000445998.1	817	221aa	ENSP00000412561.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	C9IYQ4	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete, <p>TSL 3: A transcript where the only support is from a single EST</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:3,

Summary

Statistics

Exons: 2, Coding exons: 1, Transcript length: 2,379 bps, Translation length: 655 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS7758

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9H347

Transcript Support Level (TSL)

TSL:1

Version

ENST00000311659.5

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: UBQLN3-201 ENST00000311659.5

Summary

Transcript-based displays

About Us

Get help

Our sister sites

Follow us

Favourite species

All species

Recent locations

Transcript: UBQLN3-201 ENST00000311659.5

Summary

Transcript-based displays

About Us

Get help

Our sister sites

Follow us