Transcript: LSM3-201 ENST00000306024.4

Description

LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated [Source:HGNC Symbol;Acc:HGNC:17874]

Gene Synonyms

SMX4, USS2, YLR438C

Location

About this transcript

This transcript has 4 exons, is annotated with 14 domains and features, is associated with 6074 variant alleles and maps to 420 oligo probes.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
LSM3-201	ENST00000306024.4	3359	102aa	ENSP00000302160.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS2619	P62310	NM_014463.3	<p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select v0.92,

Summary

Statistics

Exons: 4, Coding exons: 4, Transcript length: 3,359 bps, Translation length: 102 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS2619

Uniprot

This transcript corresponds to the following Uniprot identifiers: P62310

Transcript Support Level (TSL)

TSL:1

Version

ENST00000306024.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.