Transcript: PSD2-201 ENST00000274710.4

Description

pleckstrin and Sec7 domain containing 2 [Source:HGNC Symbol;Acc:HGNC:19092]

Gene Synonyms

DKFZp761B0514, EFA6C

Location

Chromosome 5: 139,795,808-139,844,466 forward strand.

About this transcript

This transcript has 15 exons, is annotated with 33 domains and features, is associated with 13804 variant alleles and maps to 460 oligo probes.

Gene

This transcript is a product of gene ENSG00000146005.4 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt Match	RefSeq Match	Flags
PSD2-201	ENST00000274710.4	4526	771aa	ENSP00000274710.3	Gene/transcipt that contains an open reading frame (ORF).Protein coding	CCDS4216	Q9BQI7	NM_032289.4	<p>TSL 1: A transcript where all splice junctions are supported by at least one non-suspect mRNA.</p><p>The Transcript Support Level (TSL) is a method to highlight the well-supported and poorly-supported transcript models for users, based on the type and quality of the alignments used to annotate the transcript.</p>TSL:1, The GENCODE set is the gene set for human and mouse. <a href="/Help/Glossary?id=500" class="popup">GENCODE Basic</a> is a subset of representative transcripts (splice variants).GENCODE basic, <p>APPRIS P1: Transcript(s) expected to code for the main functional isoform based solely on the core modules in the APPRIS.</p><p>APPRIS is a system to annotate alternatively spliced transcripts based on a range of computational methods to identify the most functionally important transcript(s) of a gene.</p>APPRIS P1, The Matched Annotation from NCBI and EMBL-EBI is a collaboration between Ensembl/GENCODE and RefSeq. The MANE Select is a default transcript per human gene that is representative of biology, well-supported, expressed and highly-conserved. This transcript set matches GRCh38 and is 100% identical between RefSeq and Ensembl/GENCODE for 5' UTR, CDS, splicing and 3'UTR.MANE Select v0.92,
PSD2-202	ENST00000651792.1	383	128aa	ENSP00000498695.1	Gene/transcipt that contains an open reading frame (ORF).Protein coding	-	A0A494C0U2	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete,

Summary

Statistics

Exons: 15, Coding exons: 14, Transcript length: 4,526 bps, Translation length: 771 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS4216

Uniprot

This transcript corresponds to the following Uniprot identifiers: Q9BQI7

Transcript Support Level (TSL)

TSL:1

Version

ENST00000274710.4

Type

Protein coding

Annotation Method

Transcript where the Ensembl genebuild transcript and the Havana manual annotation have the same sequence, for every base pair. See article.

GENCODE basic gene

This transcript is a member of the Gencode basic gene set.

Transcript: PSD2-201 ENST00000274710.4

Summary

Transcript-based displays

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Transcript: PSD2-201 ENST00000274710.4

Summary

Transcript-based displays

About Us

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